研究代表者を二重下線で研究分担者を下線で示してあります。
2024
Tani Y, Yanagisawa H, Yagi T, Kikkawa M
Structure and function of FAP47 in the central pair apparatus of Chlamydomonas flagella
Cytoskeleton (2024) DOI: 10.1002/cm.21882
Morikawa M, Yamaguchi H, Kikkawa M
Calaxin is a key factor for calcium-dependent waveform control in zebrafish sperm
Life Sci. Alliance (2024) DOI: 10.26508/lsa.202402632
水上班・山本班の共同研究
Mashita T, Kowada T, Yamamoto H, Hamaguchi S, Sato T, Matsui T, Mizukami S
Quantitative control of subcellular protein localization with a photochromic dimerizer
Nat. Chem. Biol. (2024) DOI: 10.1038/s41589-024-01654-w
Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Nagatoishi S, Takemoto K, Tsumoto K, Nishizawa T, Kikkawa M, Saito A
Cryo-EM structures elucidate the multiligand receptor nature of megalin
Proc. Natl. Acad. Sci. USA (2024) DOI: 10.1073/pnas.2318859121
Lei YK, Yagi K, Sugita Y
Learning QM/MM potential using equivariant multiscale model
J. Chem. Phys. (2024) DOI: 10.1063/5.0205123
西田班・杉田班の共同研究
Watanabe K, Zhao Q, Iwatsuki R, Fukui R, Ren W, Sugita Y, Nishida N
Deciphering the Multi-state Conformational Equilibrium of HDM2 in the Regulation of p53 Binding: Perspectives from Molecular Dynamics Simulation and NMR Analysis
J. Am. Chem. Soc. (2024) DOI: 10.1021/jacs.3c14383
Jung J, Tan C, Sugita Y
GENESIS CGDYN: large-scale coarse-grained MD simulation with dynamic load balancing for heterogeneous biomolecular systems
Nat. Commun. (2024) DOI: 10.1038/s41467-024-47654-1
Ito S, Sugita Y
Free-energy landscapes of transmembrane homodimers by bias-exchange adaptively biased molecular dynamics
Biophys. Chem. (2024) DOI: 10.1016/j.bpc.2024.107190
Yu I, Mori T, Matsuoka D, Surblys D, Sugita Y
SPANA: Spatial decomposition analysis for cellular-scale molecular dynamics simulations
J. Comput. Chem. (2024) DOI: 10.1002/jcc.27260
Zhao Q, Shimada I, Nishida N
Real-Time Monitoring of RAS Activity Using In Vitro and In-Cell NMR Spectroscopy
Methods Mol. Biol. (2024) DOI: 10.1007/978-1-0716-3822-4_17
Yurtsever A, Hirata K, Kojima R, Miyazawa K, Miyata K, Kesornsit S, Zareie H, Sun L, Maeda K, Sarikaya M, Fukuma T
Dynamics of Molecular Self-Assembly of Short Peptides at Liquid-Solid Interfaces - Effect of Charged Amino Acid Point Mutations
Small (2024) DOI: 10.1002/smll.202400653
Ando R, Shimozono S, Ago H, Takagi M, Sugiyama M, Kurokawa H, Hirano M, Niino Y, Ueno G, Ishidate F, Fujiwara T, Okada Y, Yamamoto M, Miyawaki A
StayGold variants for molecular fusion and membrane-targeting applications
Nat. Methods (2024) DOI: 10.1038/s41592-023-02085-6
Hirano M, Yonemaru Y, Shimozono S, Sugiyama M, Ando R, Okada Y, Fujiwara T, Miyawaki A
StayGold photostability under different illumination modes
Sci. Rep. (2024) DOI: 10.1038/s41598-024-55213-3
Watanabe S, Kise Y, Yonezawa K, Inoue M, Shimizu N, Nureki O, Inaba K
Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport
Nat. Commun. (2024) DOI: 10.1038/s41467-024-46747-1
Okuma H, Saijo-Hamano Y, Yamada H, Sherif AA, Hashizaki E, Sakai N, Kato T, Imasaki T, Kikkawa S, Nitta E, Sasai M, Abe T, Sugihara F, Maniwa Y, Kosako H, Takei K, Standley DM, Yamamoto M, Nitta R
Structural basis of Irgb6 inactivation by Toxoplasma gondii through the phosphorylation of switch I
Genes Cells (2024) DOI: 10.1111/gtc.13080
Takada A, Asano T, Nakahama KI, Ono T, Nakata T, Ishii T
Development of an optogenetics tool, Opto-RANK, for control of osteoclast differentiation using blue light
Sci. Rep. (2024) DOI: 10.1038/s41598-024-52056-w
Asano T, Sasse P, Nakata T
Development of a Cre-recombination-based color-switching reporter system for cell fusion detection
Biochem. Biophys. Res. Commun. (2024) DOI: 10.1016/j.bbrc.2023.149231
Ninomiya K, Ohta K, Kawasaki U, Chiba S, Inoue T, Kuranaga E, Ohashi K, Mizuno K
Calcium influx promotes PLEKHG4B localization to cell-cell junctions and regulates the integrity of junctional actin filaments
Mol. Biol. Cell (2024) DOI: 10.1091/mbc.E23-05-0154
Shinoda S, Sakai Y, Matsui T, Uematsu M, Koyama-Honda I, Sakamaki JI, Yamamoto H, Mizushima N
Syntaxin 17 recruitment to mature autophagosomes is temporally regulated by PI4P accumulation
eLife (2024) DOI: 10.7554/eLife.92189
Furuita K, Kojima C
Improved analysis of NMR chemical shift perturbations through an error estimation method
Biophys. Chem. (2024) DOI: 10.1016/j.bpc.2024.107255
Qiu Y, Sajidah ES, Kondo S, Narimatsu S, Sandira MI, Higashiguchi Y, Nishide G, Taoka A, Hazawa M, Inaba Y, Inoue H, Matsushima A, Okada Y, Nakada M, Ando T, Lim K, Wong RW
An Efficient Method for Isolating and Purifying Nuclei from Mice Brain for Single-Molecule Imaging Using High-Speed Atomic Force Microscopy
Cells (2024) DOI: 10.3390/cells13030279
Kato Y, Uto T, Ishizaki T, Tanaka D, Ishibashi K, Matsuda Y, Onoda I, Kobayashi A, Hazawa M, Wong RW, Takahashi K, Hirata E, Kuroda K
Optimization of Zwitterionic Polymers for Cell Cryopreservation
Macromol. Biosci. (2024) DOI: 10.1002/mabi.202300499
Altas B, Rhee HJ, Ju A, Solís HC, Karaca S, Winchenbach J, Kaplan-Arabaci O, Schwark M, Ambrozkiewicz MC, Lee C, Spieth L, Wieser GL, Chaugule VK, Majoul I, Hassan MA, Goel R, Wojcik SM, Koganezawa N, Hanamura K, Rotin D, Pichler A, Mitkovski M, de Hoz L, Poulopoulos A, Urlaub H, Jahn O, Saher G, Brose N, Rhee J, Kawabe H
Nedd4-2-dependent regulation of astrocytic Kir4.1 and Connexin43 controls neuronal network activity
J. Cell Biol. (2024) DOI: 10.1083/jcb.201902050
YYamamura M, Hanamura K, Koganezawa N, Furubayashi S, Shirao T, Kawabe H
Impacts of methotrexate on survival, dendrite development, and synapse formation of cortical neurons
Genes Cells (2024) DOI: 10.1111/gtc.13035
Fujii T, Liang L, Nakayama K, Katoh Y
Defects in diffusion barrier function of ciliary transition zone caused by ciliopathy variations of TMEM218
Hum. Mol. Genet. (2024) DOI: 10.1093/hmg/ddae083
Utsunomiya S, Takebayashi K, Yamaguchi A, Sasamura T, Inaki M, Ueda M, Matsuno K
Left-right Myosin-Is, Myosin1C, and Myosin1D exhibit distinct single molecule behaviors on the plasma membrane of Drosophila macrophages
Genes Cells (2024) DOI: 10.1111/gtc.13110
Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
RhoG facilitates a conformational transition in the guanine nucleotide exchange factor complex DOCK5/ELMO1 to an open state
J. Biol. Chem. (2024) DOI: 10.1016/j.jbc.2024.107459
Fukuma T
Visualizing the inside of three-dimensional self-organizing systems by three-dimensional atomic force microscopy
Jpn. J. Appl. Phys. (2024) DOI: 10.35848/1347-4065/acf721
Bui HB, Inaba K
Structures, mechanisms, and physiological functions of Zinc transporters in different biological kingdoms
Int. J. Mol. Sci. (2024) DOI: 10.3390/ijms25053045
Yamamoto H, Matsui T
Molecular mechanisms of macroautophagy, microautophagy, and chaperone-mediated autophagy
J. Nippon Med. Sch. (2024) DOI: 10.1272/jnms.JNMS.2024_91-102
Lim K, Hazawa M, Wong RW
Crafty mimicry grants nuclear pore entry to HIV
Cell Host Microbe. (2024) DOI: 10.1016/j.chom.2024.03.004
Chiba K, Niwa S
Autoinhibition and activation of kinesin-1 and their involvement in amyotrophic lateral sclerosis
Curr. Opin. Cell Biol. (2024) DOI: 10.1016/j.ceb.2023.102301
2023
稲葉班・吉川班の共同研究
Chen Z, Watanabe S, Hashida H, Inoue M, Daigaku Y, Kikkawa M, Inaba K
Cryo-EM structures of human SPCA1a reveal the mechanism of Ca2+/Mn2+ transport into the Golgi apparatus
Sci. Adv. (2023) DOI: 10.1126/sciadv.add9742
稲葉班・吉川班の共同研究
Bui HB, Watanabe S, Nomura N, Liu K, Uemura T, Inoue M, Tsutsumi A, Fujita H, Kinoshita K, Kato Y, Iwata S, Kikkawa M, Inaba K
Cryo-EM structures of human zinc transporter ZnT7 reveal the mechanism of Zn2+ uptake into the Golgi apparatus
Nat. Commun. (2023) DOI: 10.1038/s41467-023-40521-5
小田班・吉川班の共同研究
Yanagisawa H, Kita Y, Oda T, Kikkawa M
Cryo-EM elucidates the uroplakin complex structure within liquid-crystalline lipids in the porcine urothelial membrane
Commun. Biol. (2023) DOI: 10.1038/s42003-023-05393-x
小田班・吉川班の共同研究
Kubo T, Tani Y, Yanagisawa HA, Kikkawa M, Oda T
α- and β-tubulin C-terminal tails with distinct modifications are crucial for ciliary motility and assembly
J. Cell Sci. (2023) DOI: 10.1242/jcs.261070
Yamaguchi H, Morikawa M, Kikkawa M
Calaxin stabilizes the docking of outer arm dyneins onto ciliary doublet microtubule in vertebrates
eLife (2023) DOI: 10.7554/eLife.84860
Ito C, Makino T, Mutoh T, Kikkawa M, Toshimori K
The association of ODF4 with AK1 and AK2 in mice is essential for fertility through its contribution to flagellar shape
Sci. Rep. (2023) DOI: 10.1038/s41598-023-28177-z
Takeda H, Busto JV, Lindau C, Tsutsumi A, Tomii K, Imai K, Yamamori Y, Hirokawa T, Motono C, Ganesan I, Wenz LS, Becker T, Kikkawa M, Pfanner N, Wiedemann N, Endo T
A multipoint guidance mechanism for β-barrel folding on the SAM complex
Nat. Struct. Mol. Biol. (2023) DOI: 10.1038/s41594-022-00897-2
Kasahara K, Masayama R, Okita K, Matubayasi N
Elucidating protein-ligand binding kinetics based on returning probability theory
J. Chem. Phys. (2023) DOI: 10.1063/5.0165692
Ugarte La Torre D, Takada S, Sugita Y
Extension of the iSoLF implicit-solvent coarse-grained model for multicomponent lipid bilayers
J. Chem. Phys. (2023) DOI: 10.1063/5.0160417
Jung J, Kobayashi C, Sugita Y
Acceleration of generalized replica exchange with solute tempering simulations of large biological systems on massively parallel supercomputer
J. Comput. Chem. (2023) DOI: 10.1002/jcc.27124
Ito S, Yagi K, Sugita Y
Allosteric regulation of β-reaction stage I in tryptophan synthase upon the α-ligand binding
J. Chem. Phys. (2023) DOI: 10.1063/5.0134117
Tan C, Niitsu A, Sugita Y
Highly Charged Proteins and Their Repulsive Interactions Antagonize Biomolecular Condensation
JACS Au (2023) DOI: 10.1021/jacsau.2c00646
Zhao Q, Haga R, Tamura S, Shimada I, Nishida N
Real-time monitoring of the reaction of KRAS G12C mutant specific covalent inhibitor by in vitro and in-cell NMR spectroscopy
Sci. Rep. (2023) DOI: 10.1038/s41598-023-46623-w
Ichikawa T, Alam MS, Penedo M, Matsumoto K, Fujita S, Miyazawa K, Furusho H, Miyata K, Nakamura C, Fukuma T
Protocol for live imaging of intracellular nanoscale structures using atomic force microscopy with nanoneedle probes
STAR Protoc. (2023) DOI: 10.1016/j.xpro.2023.102468
Miyazawa K, Penedo M, Furusho H, Ichikawa T, Alam MS, Miyata K, Nakamura C, Fukuma T
Nanoendoscopy-AFM for Visualizing Intracellular Nanostructures of Living Cells
Microsc. Microanal. (2023) DOI: 10.1093/micmic/ozad067.387
Biyani R, Hirata K, Oqmhula K, Yurtsever A, Hongo K, Maezono R, Takagi M, Fukuma T, Biyani M
Biophysical Properties of the Fibril Structure of the Toxic Conformer of Amyloid-β42: Characterization by Atomic Force Microscopy in Liquid and Molecular Docking
ACS Appl. Mater. Interfaces (2023) DOI: 10.1021/acsami.3c06460
Tsujioka M, Miyazawa K, Ohmuraya M, Nibe Y, Shirokawa T, Hayasaka H, Mizushima T, Fukuma T, Shimizu S
Identification of a novel type of focal adhesion remodelling via FAK/FRNK replacement, and its contribution to cancer progression
Cell Death Dis. (2023) DOI: 10.1038/s41419-023-05774-4
Yurtsever A, Sun L, Hirata K, Fukuma T, Rath S, Zareie H, Watanabe S, Sarikaya M
Molecular Scale Structure and Kinetics of Layer-by-Layer Peptide Self-Organization at Atomically Flat Solid Surfaces
ACS Nano (2023) DOI: 10.1021/acsnano.2c10673
Matsui Y, Kowada T, Ding Y, Sahoo PR, Kikuchi K, Mizukami S
Long-term imaging of intranuclear Mg2+ dynamics during mitosis using a localized fluorescent probe
Chem. Commun. (2023) DOI: 10.1039/d2cc05930d
Yamada S, Ko T, Ito M, Sassa T, Nomura S, Okuma H, Sato M, Imasaki T, Kikkawa S, Zhang B, Yamada T, Seki Y, Fujita K, Katoh M, Kubota M, Hatsuse S, Katagiri M, Hayashi H, Hamano M, Takeda N, Morita H, Takada S, Toyoda M, Uchiyama M, Ikeuchi M, Toyooka K, Umezawa A, Yamanishi Y, Nitta R, Aburatani H, Komuro I
TEAD1 trapping by the Q353R-Lamin A/C causes dilated cardiomyopathy
Sci. Adv. (2023) DOI: 10.1126/sciadv.ade7047
Fujita S, Takahashi M, Kumano G, Kuranaga E, Miura M, Nakajima YI
Distinct stem-like cell populations facilitate functional regeneration of the Cladonema medusa tentacle
PLoS Biol. (2023) DOI: 10.1371/journal.pbio.3002435
Nagai H, Nagai LAE, Tasaki S, Nakato R, Umetsu D, Kuranaga E, Miura M, Nakajima Y
Nutrient-driven dedifferentiation of enteroendocrine cells promotes adaptive intestinal growth in Drosophila
Dev. Cell (2023) DOI: 10.1016/j.devcel.2023.08.022
Aida A, Yuswan K, Kawai Y, Hasegawa K, Nakajima YI, Kuranaga E
Drosophila innate immunity suppresses the survival of xenografted mammalian tumor cells
Sci. Rep. (2023) DOI: 10.1038/s41598-023-38489-9
Fujita H, Kaneshiro J, Takeda M, Sasaki K, Yamamoto R, Umetsu D, Kuranaga E, Higo S, Kondo T, Asano Y, Sakata Y, Miyagawa S, Watanabe TM
Estimation of crossbridge-state during cardiomyocyte beating using second harmonic generation
Life Sci. Alliance (2023) DOI: 10.26508/lsa.202302070
Endo R, Chen YK, Burke J, Takashima N, Suryawanshi N, Hui KK, Miyazaki T, Tanaka M
Dysregulation of ribosome-associated quality control elicits cognitive disorders via overaccumulation of TTC3
Proc. Natl. Acad. Sci. USA (2023) DOI: 10.1073/pnas.2211522120
Otomo K, Dewa T, Matsushita M, Fujiyoshi S
Cryogenic Single-Molecule Fluorescence Detection of the Mid-Infrared Response of an Intrinsic Pigment in a Light-Harvesting Complex
J. Phys. Chem. B (2023) DOI: 10.1021/acs.jpcb.3c00284
Kato Y, Matsuda Y, Uto T, Tanaka D, Ishibashi K, Ishizaki T, Ohta A, Kobayashi A, Hazawa M, Wong RW, Ninomiya K, Takahashi K, Hirata E, Kuroda K
Cell-compatible isotonic freezing media enabled by thermo-responsive osmolyte-adsorption/exclusion polymer matrices
Commun. Chem. (2023) DOI: 10.1038/s42004-023-01061-7
Wong班・西田班の共同研究
Nishide G, Lim K, Tamura M, Kobayashi A, Zhao Q, Hazawa M, Ando T, Nishida N, Wong RW
Nanoscopic Elucidation of Spontaneous Self-Assembly of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Open Reading Frame 6 (ORF6) Protein
J. Phys. Chem. Lett. (2023) DOI: 10.1021/acs.jpclett.3c01440
Ikliptikawati DK, Hirai N, Makiyama K, Sabit H, Kinoshita M, Matsumoto K, Lim K, Meguro-Horike M, Horike SI, Hazawa M, Nakada M, Wong RW
Nuclear transport surveillance of p53 by nuclear pores in glioblastoma
Cell Rep. (2023) DOI: 10.1016/j.celrep.2023.112882
Katsube S, Koganezawa N, Hanamura K, Cuthill KJ, Tarabykin V, Ambrozkiewicz MC, Kawabe H
The murine ortholog of Kaufman oculocerebrofacial syndrome gene Ube3b is crucial for the maintenance of the excitatory synapses in the young adult stage
Neurosci. Lett. (2023) DOI: 10.1016/j.neulet.2023.137059
Tasaki K, Zhou Z, Ishida Y, Katoh Y, Nakayama K
Compound heterozygous IFT81 variations in a skeletal ciliopathy patient cause Bardet-Biedl syndrome-like ciliary defects
Hum. Mol. Genet. (2023) DOI: 10.1093/hmg/ddad112
Hiyamizu S, Qiu H, Tsurumi Y, Hamada Y, Katoh Y, Nakayama K
Dynein-2-driven intraciliary retrograde trafficking indirectly requires multiple interactions of IFT54 in the IFT-B complex with the dynein-2 complex
Biol. Open (2023) DOI: 10.1242/bio.059976
Tsujioka S, Sumino A, Nagasawa Y, Sumikama T, Flechsig H, Puppulin L, Tomita T, Baba Y, Kakuta T, Ogoshi T, Umeda K, Kodera N, Murakoshi H, Shibata M
Imaging single CaMKII holoenzymes at work by high-speed atomic force microscopy
Sci. Adv. (2023) DOI: 10.1126/sciadv.adh1069
Kukimoto-Niino M, Ihara K, Mishima-Tsumagari C, Inoue M, Fukui Y, Yokoyama S, Shirouzu M
Structural basis for the dual GTPase specificity of the DOCK10 guanine nucleotide exchange factor
Biochem. Biophys. Res. Commun. (2023) DOI: 10.1016/j.bbrc.2023.02.054
Kikkawa M
A quest to unravel the role of the stalk and microtubule-binding domain of axonemal dyneins
FEBS Lett. (2023) DOI: 10.1002/1873-3468.14707
Uechi H, Kuranaga E
Underlying mechanisms that ensure actomyosin-mediated directional remodeling of cell-cell contacts for multicellular movement: Tricellular junctions and negative feedback as new aspects underlying actomyosin-mediated directional epithelial morphogenesis: Tricellular junctions and negative feedback as new aspects underlying actomyosin-mediated directional epithelial morphogenesis
Bioessays (2023) DOI: 10.1002/bies.202200211
Suryawanshi N, Tanaka M
DISC1 protein aggregates in cerebrospinal fluid as a potential diagnostic biomarker for first-episode psychosis
Psychiatry Clin. Neurosci. (2023) DOI: 10.1111/pcn.13604
Nagasawa Y, Ueda HH, Kawabata H, Murakoshi H
LOV2-based photoactivatable CaMKII and its application to single synapses: Local Optogenetics
Biophys. Physicobiol. (2023) DOI: 10.2142/biophysico.bppb-v20.0027
吉川雅英 領域代表（東京大学）が日本顕微鏡学会学会賞（瀬藤賞）を受賞しました
第68回 令和5年度 学会賞（瀬藤賞）「クライオ電子顕微鏡を用いた細胞骨格・モー ター分子の機能構造連関の解明」
佐藤繭子 先生（理化学研究所・仁田班）が日本顕微鏡学会奨励賞を受賞しました
第24回 令和5年度 奨励賞「高圧凍結技法の生物試料への応用」
Fujiwara TK, Takeuchi S, Kalay Z, Nagai Y, Tsunoyama TA, Kalkbrenner T, Iwasawa K, Ritchie KP, Suzuki KGN, Kusumi A
Development of ultrafast camera-based single fluorescent-molecule imaging for cell biology
J. Cell Biol. (2023) DOI: 10.1083/jcb.202110160
Fujiwara TK, Tsunoyama TA, Takeuchi S, Kalay Z, Nagai Y, Kalkbrenner T, Nemoto YL, Chen LH, Shibata ACE, Iwasawa K, Ritchie KP, Suzuki KGN, Kusumi A
Ultrafast single-molecule imaging reveals focal adhesion nano-architecture and molecular dynamics
J. Cell Biol. (2023) DOI: 10.1083/jcb.202110162
稲葉班・水上班の共同研究
Amagai Y, Yamada M, Kowada T, Watanabe T, Du Y, Liu R, Naramoto S, Watanabe S, Kyozuka J, Anelli T, Tempio T, Sitia R, Mizukami S, Inaba K
Zinc homeostasis governed by Golgi-resident ZnT family members regulates ERp44-mediated proteostasis at the ER-Golgi interface
Nat. Commun. (2023) DOI: 10.1038/s41467-023-38397-6
稲葉班・吉川班の共同研究
Chen Z, Watanabe S, Hashida H, Inoue M, Daigaku Y, Kikkawa M, Inaba K
Cryo-EM structures of human SPCA1a reveal the mechanism of Ca2+/Mn2+ transport into the Golgi apparatus
Science Advances (2023) DOI: 10.1126/sciadv.add9742
Hiyamizu S, Qiu H, Vuolo L, Stevenson NL, Shak C, Heesom KJ, Hamada Y, Tsurumi Y, Chiba S, Katoh Y, Stephens DJ, Nakayama K
Multiple interactions of the dynein-2 complex with the IFT-B complex are required for effective IFT
J. Cell Sci. (2023) DOI: 10.1242/jcs.260462
Yim WW, Yamamoto H, Mizushima N
A HaloTag-based reporter processing assay to monitor autophagic flux
Autophagy (2022) DOI: 10.1080/15548627.2022.2123638
Dokainish HM, Sugita Y
Structural effects of spike protein D614G mutation in SARS-CoV-2
Biophys. J. (2022) DOI: 10.1016/j.bpj.2022.11.025
Niitsu A, Sugita Y
Towards de novo design of transmembrane α-helical assemblies using structural modelling and molecular dynamics simulation
Phys. Chem. Chem. Phys. (2023) DOI: 10.1039/d2cp03972a
水上班・杉田班の共同研究
Sarkar HS, Mashita T, Kowada T, Hamaguchi S, Sato T, Kasahara K, Matubayasi N, Matsui T, Mizukami S
Arylazopyrazole-based photoswitchable inhibitors selective for Escherichia coli dihydrofolate reductase
ACS Chem. Biol. (2023) DOI: 10.1021/acschembio.2c00749
Eisenstein F, Yanagisawa H, Kashihara H, Kikkawa M, Tsukita S, Danev R
Parallel cryo electron tomography on in situ lamellae
Nat. Methods (2023) DOI: 10.1038/s41592-022-01690-1
Toyooka K, Goto Y, Hashimoto K, Wakazaki M, Sato M, Hirai MY
Endoplasmic reticulum bodies in the lateral root cap are involved in the direct transport of beta-glucosidase to vacuoles
Plant Cell Physiol. (2023) DOI: 10.1093/pcp/pcac177
Yamamoto H, Zhang S, Mizushima N
Autophagy genes in biology and disease
Nat. Rev. Genet. (2023) DOI: 10.1038/s41576-022-00562-w
Lim K, Nishide G, Sajidah ES, Yamano T, Qiu Y, Yoshida T, Kobayashi A, Hazawa M, Ando T, Hanayama R, Wong RW
Nanoscopic assessment of anti-SARS-CoV-2 spike neutralizing antibody using high-speed AFM
Nano Lett. (2023) DOI: 10.1021/acs.nanolett.2c04270
Chiba K, Kita T, Anazawa Y, Niwa S
Insight into the regulation of axonal transport from the study of KIF1A-associated neurological disorder
J. Cell Sci. (2023) DOI: 10.1242/jcs.260742
2022
稲葉班・杉田班・吉川班の共同研究
Zhang Y, Kobayashi C, Cai X, Watanabe S, Tsutsumi A, Kikkawa M, Sugita Y, Inaba K
Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle
Cell Rep. (2022) DOI: 10.1016/j.celrep.2022.111760
Matsunaga Y, Kamiya M, Oshima H, Jung J, Ito S, Sugita Y
Use of multistate Bennett acceptance ratio method for free-energy calculations from enhanced sampling and free-energy perturbation
Biophys. Rev. (2022) DOI: 10.1007/s12551-022-01030-9
Sajidah ES, Lim K, Yamano T, Nishide G, Qiu Y, Yoshida T, Wang H, Kobayashi A, Hazawa M, Dewi FRP, Hanayama R, Ando T, Wong RW
Spatiotemporal tracking of small extracellular vesicle nanotopology in response to physicochemical stresses revealed by HS-AFM
J. Extracell. Vesicles (2022) DOI: 10.1002/jev2.12275
Hayakawa Y, Takaine M, Ngo KX, Imai T, Yamada MD, Behjat AB, Umeda K, Hirose K, Yurtsever A, Kodera N, Tokuraku K, Numata O, Fukuma T, Ando T, Nakano K, Uyeda TQ
Actin-binding domain of Rng2 sparsely bound on F-actin strongly inhibits actin movement on myosin II
Life Sci. Alliance (2022) DOI: 10.26508/lsa.202201469
Yurtsever A, Wang P-X, Priante F, Morais Jaques Y, Miyazawa K, MacLachlan MJ, Foster AS, Fukuma T
Molecular insights on the crystalline cellulose-water interfaces via three-dimensional atomic force microscopy
Sci. Adv. (2022) DOI: 10.1126/sciadv.abq0160
Raspadori A, Vignali V, Murello A, Giachin G, Samorì B, Tanaka M, Bustamante C, Zuccheri G, Legname G
Evidence of Orientation-Dependent Early States of Prion Protein Misfolded Structures from Single Molecule Force Spectroscopy
Biology (2022) DOI: 10.3390/biology11091358
Zhang Y, Inaba K
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eLife (2022) DOI: 10.7554/eLife.77365
2021
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Saijo-Hamano Y, Sherif AA, Pradipta A, Sasai M, Sakai N, Sakihama Y, Yamamoto M, Standley DM, Nitta R
Structural basis of membrane recognition of Toxoplasma gondii vacuole by Irgb6
Life Sci. Alliance (2021) DOI: 10.26508/lsa.202101149
稲葉班・吉川班の共同研究
Zhang Y, Watanabe S, Tsutsumi A, Kadokura H, Kikkawa M, Inaba K
Cryo-EM analysis provides new mechanistic insight into ATP binding to Ca2+-ATPase SERCA2b
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